| Date | Player | Position | Transaction |
|---|---|---|---|
| Nov 11 | Joe Thurston | 3B/2B/LF | Refused minor league assignment - free agent by St. Louis |
| Nov 9 | Todd Wellemeyer | SP/RP | Declared free agency by St. Louis |
| Nov 6 | Joel PiƱeiro | SP/RP | Declared free agency by St. Louis |
| Nov 5 | Rick Ankiel | CF/RF/LF | Declared free agency by St. Louis |
| Nov 5 | Mark DeRosa | 3B/RF/LF/1B/2B | Declared free agency by St. Louis |
| Nov 5 | Troy Glaus | 3B/1B | Declared free agency by St. Louis |
| Nov 5 | Khalil Greene | SS/3B | Declared free agency by St. Louis |
| Nov 5 | Matt Holliday | LF | Declared free agency by St. Louis |
| Nov 5 | Jason LaRue | C/1B | Declared free agency by St. Louis |
| Nov 5 | John Smoltz | SP | Declared free agency by St. Louis |
| Nov 5 | Brad Thompson | RP/SP | Cleared waivers and became a free agent by St. Louis |
| Nov 3 | Jarrett Hoffpauir | 2B/3B | Acquired off waivers from St. Louis to Toronto |
| Nov 3 | Joe Thurston | 3B/2B/LF | Outrighted to minors by St. Louis |
| Nov 3 | Brad Thompson | RP/SP | Released by St. Louis |